Montpellier Systems & Synthetic Biology Platform


This platform is meant to provide a user-friendly interface towards original algorithms for Genome-wide investigations in Arabidopsis.

Several algorithms are currently developed and will be released in the "Online Programs" section. Each program is provided with some documentation on the same window.

Program released in the M2SB-Plateform 1.0

GeneCloud:

This script uses a semantic technique to scan over gene descriptions of a particular gene list (that you provide). It returns only semantic terms, on a 'word cloud' format, that are significantly more represented in the list of genes compared to the whole genome background. It tends to be very powerful and gives complementary yet similar results with GO term enrichment analysis. Compared to GO analysis, it does not care about categories. Each word in a description is handled on itself. If this word occurs more than randomly it is kept and displayed. For instance if your list of gene is enriched of the term "myb", "hairs", or "endomembrane" it will be displayed.


                                              
This project is supported by the ANR (french Agence Nationale de la Recherche) and the CNRS
through the NitroNet and SuperRegNet-(PEPS) project granted to Gabriel Krouk


© 2014-2015 M2SB - Legal notice - Publication director: Alain Gojon - R developments: Gabriel Krouk - Conception / Administration: Cécile Fizames